Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs141342723 chr6:27622084 T/C 1.21E-8 288 25.58 29.2 9.77 KM Plot
KIRP rs141397687 chr2:201040759 ATATC/A 3.62E-14 278 25.7 23.97 2.23 KM Plot
KIRP rs141420775 chr10:43419894 GT/G 4.94E-5 288 25.93 24.57 11.43 KM Plot
KIRP rs141799723 chr2:47134511 C/CT 2.62E-7 287 25.5 33.53 10.97 KM Plot
KIRP rs141935404 chr11:46947837 C/T 6.04E-6 285 25.4 28.1 12.63 KM Plot
KIRP rs141946445 chr21:44229738 G/GCA 0.000162 286 25.53 43.53 13.07 KM Plot
KIRP rs141974260 chr10:43404824 C/A 6.57E-5 285 25.93 25.5 11.43 KM Plot
KIRP rs142015767 chr15:64389579 TTTTGGGAATTCAGC/T 2.7E-6 283 28.03 25.15 18.03 KM Plot
KIRP rs142065204 chr10:43097595 G/A 7.16E-5 288 25.4 27.47 11.43 KM Plot
KIRP rs142164928 chr13:46971795 TC/T 4.91E-7 289 24.8 37.87 23.23 KM Plot
KIRP rs142177829 chr11:47043454 CCCAATGACAT/C 9.21E-12 287 25.57 27.3 10.82 KM Plot
KIRP rs142340922 chr19:39317456 G/C 9.28E-6 276 24.48 38.03 10.97 KM Plot
KIRP rs142511980 chr15:61551291 T/G 1.49E-7 283 26.37 24.73 7.47 KM Plot
KIRP rs1425323 chr4:37799933 A/G 3.98E-5 289 6.4 20.27 26.52 KM Plot
KIRP rs142548572 chr17:80735801 C/T 1.52E-9 279 26.07 25.85 16.4 KM Plot